ESRRG _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019142
Fusion event
HBV-ESRRG integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
217303039/217129697 (Hg38)
End
217303046/217129704 (Hg38)
Location type
Intron8
Target gene
ESRRG
miRNAs that regulate target gene
hsa-mir-205-5p ; hsa-mir-762 ; hsa-mir-5001-5p ; hsa-mir-4498 ; hsa-mir-4492 ; hsa-mir-6815-3p ; hsa-mir-2115-5p ; hsa-mir-5580-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-935 ; hsa-mir-320a
Nearest miRNA
hsa-mir-101-1/Upstream/5052012; hsa-mir-1182/Downstream/2988149;
Nearest TSS
ENST00000473358/Upstream/39150; ENST00000470448/Downstream/8050;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/39825, chr1-CpG: 99/Downstream/4698
Upstream sequence
GTGTTCCAAGTTCCACGAAATAGCTCAAGAAGTTAACCAGTTCCGTTCCAGCCTTCTTGATCAGGGGTGTCAGCTGCTCCTTTGACTTTTCAAAGTAAGA
Downstream sequence
acaaaaggccaaatgttaaatgattccaactataaaatgtccagaataggcaaacccatagagacagaaagcagattaaggcttgacagtggctgaaggg
Target sequence
gccagat
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate