Basic Information
VIS ID
TVIS10019143
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
217378610/217205268 (Hg38)
End
217378669/217205327 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/5127583; hsa-mir-1182/Downstream/2912526;
Nearest TSS
ENST00000473358/Upstream/67513; ENST00000470448/Downstream/293437;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/66837, chr1-CpG: 21/Downstream/425598
Nearby gene
GPATCH2
Upstream sequence
actcggtgggaggtgattggatgatgggggcgggtctttcttccactgttctcgtgatagtgaatgagtcttacgagatcttatggttttagaaaacggg
Downstream sequence
ttaattgaatcattctttgttttccattttaatttcttaactgactctttttctacatgccattgatatggtttggctatgttcccacccaaatctcatc
Target sequence
tttaagttatctcagttgatttttcatcctctgtttagcttttcctatcttcttttgtg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate