Basic Information
VIS ID
TVIS10019144
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
GRCh37/hg19
Start
240230969/240067669 (Hg38)
End
240230969/240067669 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/2596478; hsa-mir-3123/Downstream/1064603;
Nearest TSS
ENST00000473358/Upstream/53321; ENST00000441342/Downstream/24211;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/69353, chr1-CpG: 185/Downstream/23990
Nearby gene
FMN2
Upstream sequence
cctggtcacaggtgggacaactgggcattaggctgtcctccagccaaaagaagcgttccataaaaggcatacagcaaacatccacgttcagctccccttc
Downstream sequence
gtaatttcagagcttggtaaagagtatgccctcagtgtttattgaattaaATTACACGGAATATGCATAATTTTTATCAATCTTGAGAATGTTGGTATAT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate