VISDB Viral Integration Site DataBase

VIS ID

TVIS10019147

Fusion event

HBV-CPS1 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr2

Cytoband

q34

Reference genome

Start

End

211486511/210621787 (Hg38)

Location type

Intron22

Target gene

miRNAs that regulate target gene

hsa-mir-17-5p ; hsa-mir-3121-3p ; hsa-mir-4255 ; hsa-mir-4709-3p ; hsa-mir-7154-5p ; hsa-mir-101-3p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-6744-5p ; hsa-mir-8060 ; hsa-mir-16-1-3p ; hsa-mir-144-3p ; hsa-mir-216a-5p ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-4694-3p ; hsa-mir-6516-5p ; hsa-mir-6738-3p ; hsa-mir-1303 ; hsa-mir-3678-3p ; hsa-mir-1273h-3p ; hsa-mir-5001-3p ; hsa-mir-4727-5p ; hsa-mir-1200 ; hsa-mir-142-3p ; hsa-mir-630 ; hsa-mir-146b-3p ; hsa-mir-6799-3p ; hsa-mir-3173-5p ; hsa-mir-7976 ; hsa-mir-496 ; hsa-mir-302a-5p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-4682 ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-4778-5p ; hsa-mir-200b-5p ; hsa-mir-200a-5p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-548l ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-548c-3p

Nearest miRNA

hsa-mir-10b/Upstream/2866817; hsa-mir-1244-1/Downstream/1804476;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/144886, chr2-CpG: 86/Downstream/1915669

Upstream sequence

GCACACACGCACAGACATACATTTAACTGCATTTTGCCTTTTTGTCTTTTCAGAAGACTTCAAATAGTGATGGTTACCAATCTGTTAACTGAAAACCTAA

Downstream sequence

CTCTTAATACTGAAACTTGAATTTTGATTCAGTTTAATAATTCTGAATGCCTTCCAAGGGTAAGATaataatcacaaaaatttttggactacatattaag

Target sequence

TAAATCAAATAAAGATGTCAAATGTCTTCACCAACTAGGTTCTTCTGATATAGCCTATTCCTTATTGTAACCAAATAATGAATTTATAA