Basic Information
VIS ID
TVIS10019148
Fusion event
HBV-chr2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
224053674/223188956 (Hg38)
End
224053674/223188956 (Hg38)
Nearest miRNA
hsa-mir-10b/Upstream/3282391; hsa-mir-1244-1/Downstream/1821505;
Nearest TSS
ENST00000437798/Upstream/136756; ENST00000422118/Downstream/309817;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/135637, chr2-CpG: 79/Downstream/648265
Nearby gene
KCNE4
Upstream sequence
acagagttgagaatccaaaaatgacctttatatttatgaccactgattttcaacaaaggtgccaaggcaattcaatgggggaaggatagtcttttcaaca
Downstream sequence
gtgggggtcacaaggtgctcagtaggggagcttttgagccaggatgagccaggagaaggaatttcacaagataatatcatcagttaaggcaggaacccac
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate