DOCK10 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019149
Fusion event
HBV-DOCK10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr2
Cytoband
q36.2
Reference genome
GRCh37/hg19
Start
225646303/224781586 (Hg38)
End
225646303/224781586 (Hg38)
Location type
Intron6
Target gene
DOCK10
miRNAs that regulate target gene
hsa-mir-142-3p ; hsa-mir-132-3p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-218-5p
Nearest miRNA
hsa-mir-10b/Upstream/4875021; hsa-mir-1244-1/Downstream/228875;
Nearest TSS
ENST00000437798/Upstream/65221; ENST00000636099/Downstream/5532;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/195815, chr2-CpG: 114/Downstream/260350
Upstream sequence
CTCATCCAGACCCTCCCAGATGGGTTAGTTTTGAGAAACTGCACGCAGGCCACCCCAAAGACTAGGTCTTCCCCTGGAGGGCAAGCTCCCTGTGGCCCAC
Downstream sequence
CAGGGTCAGTTTCTCTTTTGCTTTAGCCCCAAGGTTATAAGCTGACTGCATTTCAAGGCAATGGGAAATGTGATCTCTGCACTTCCCTTGCTAGTTTGAT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate