VISDB Viral Integration Site DataBase

VIS ID

TVIS10019150

Fusion event

HBV-FNDC3B integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr3

Cytoband

q26.31

Reference genome

Start

End

172095473/172377683 (Hg38)

Location type

Intron23

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-143-3p ; hsa-mir-335-5p ; hsa-mir-155-5p ; hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-98-5p ; hsa-mir-30a-5p ; hsa-mir-26b-5p ; hsa-mir-378a-3p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-mir-495-3p ; hsa-mir-5688 ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-373-5p ; hsa-mir-616-5p ; hsa-mir-888-5p ; hsa-mir-4649-3p ; hsa-mir-371b-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-218-5p ; hsa-mir-6516-5p ; hsa-mir-6874-5p ; hsa-mir-455-3p ; hsa-mir-6880-5p ; hsa-mir-6799-5p ; hsa-mir-3622b-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6500-5p ; hsa-mir-4633-3p ; hsa-mir-4327 ; hsa-mir-6499-3p ; hsa-mir-4722-5p ; hsa-mir-6134 ; hsa-mir-1827 ; hsa-mir-1247-3p ; hsa-mir-4768-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-5197-5p ; hsa-mir-9-3p ; hsa-mir-6835-3p ; hsa-mir-4422 ; hsa-mir-6513-5p ; hsa-mir-3656 ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-6788-5p ; hsa-mir-1273h-5p ; hsa-mir-30c-2-3p ; hsa-mir-7977 ; hsa-mir-30c-1-3p ; hsa-mir-675-5p ; hsa-mir-4466 ; hsa-mir-6848-5p ; hsa-mir-6846-5p ; hsa-mir-4283 ; hsa-mir-4437 ; hsa-mir-4284 ; hsa-mir-744-5p ; hsa-mir-4749-5p ; hsa-mir-4706 ; hsa-mir-342-3p ; hsa-mir-383-3p ; hsa-mir-1228-3p ; hsa-mir-1273a ; hsa-mir-4696 ; hsa-mir-6501-3p ; hsa-mir-451b ; hsa-mir-3145-5p ; hsa-mir-4432

Nearest miRNA

hsa-let-7g/Upstream/1270924; hsa-mir-1224/Downstream/2991857;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/336749, chr3-CpG: 107/Downstream/69899

Nearest cancer related gene

FNDC3B(OG, No orient, 0)

Upstream sequence

TCCTAAATTAATAGCATTACATATGTCTCATTTCTTTGCCTTCTTAGTGGATTTTAATCATGTCTAACACATGTTTCAAAGTTATTGGATTTCAGGTGCA

Downstream sequence

ATTCTGAACACAGCATTTTTTTTTCTTTTTACATGTGTTCTCAACGATCCATAATCCTAAATATCTCCTTAGCAGTTGAGGAATGGGGCTTTGAAAGCTC