Basic Information
VIS ID
TVIS10019151
Fusion event
HBV-chr3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
GRCh37/hg19
Start
192853755/193135966 (Hg38)
End
192853756/193135967 (Hg38)
Nearest miRNA
hsa-let-7g/Upstream/3305957; hsa-mir-3137/Downstream/1998539;
Nearest TSS
ENST00000440867/Upstream/217805; ENST00000264735/Downstream/40897;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/217788, chr3-CpG: 84/Downstream/104953
Nearby gene
PLAAT1
Upstream sequence
GGCACGGTTGGGGTCTTGGTCAGGATGCAGGGAAGATCGGGGAGAACGCTGGGTCCAAACTCTGCTACCTGGGAGGCTGAGATCTCAACCCCACACCCAC
Downstream sequence
TGCTAAAGCACTtctaactataccctctaaatggagactgtaaaatattctgagacaaagggaatTTGAACATTGTTAAGAATGCAGAATTTTATGCTGA
Target sequence
A
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate