Basic Information
VIS ID
TVIS10019152
Fusion event
HBV-LOC105374520 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
22686400/22684777 (Hg38)
End
22686400/22684777 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
LOC105374520
Nearest miRNA
hsa-mir-12113/Upstream/169392; hsa-mir-1243/Downstream/1835415;
Nearest TSS
ENST00000502981/Upstream/168723; ENST00000503017/Downstream/312774;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/168352, chr4-CpG: 266/Downstream/1785300
Nearby gene
GBA3
Upstream sequence
acttgaacacaagccctgaaataccacaccagtccatctaataaccaagatgcctactaagtaacgaacaggtaggtagcacatacagagtggatatgat
Downstream sequence
gggactaactgggttggcttggctcaccattgtctttctagagtttagtatggttcctggctcatagtaaatgctccatgtatttttggtgaatgaatTG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate