Basic Information
VIS ID
TVIS10019153
Fusion event
HBV-LOC105377507 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
156796493/155875341 (Hg38)
End
156796493/155875341 (Hg38)
Location type
Intronic
Target gene
LOC105377507
Nearest miRNA
hsa-mir-12113/Upstream/3338825; hsa-mir-1305/Downstream/3253461;
Nearest TSS
ENST00000502981/Upstream/9068; ENST00000509738/Downstream/28352;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/115107, chr4-CpG: 41/Downstream/78247
Nearby gene
TDO2
Upstream sequence
ATTAAGAATGTCTTGAGTAAACCAATGTAAAACAAGAACTTTCAGATACTAAAATTAATTTCCCACTCATTTCTTTCTATCTATCTCTGTCGCCCTTCTG
Downstream sequence
gaatttgattttcagaagcctgttaaatgtgttagcggtttaaaacacttgatattatgaaatagaactccagattaccttgttatttattttgccaaaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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