Basic Information
VIS ID
TVIS10019156
Fusion event
HBV-LINC02241 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
20709673/20709564 (Hg38)
End
20709677/20709568 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA5E
Target gene
LINC02241
Nearest miRNA
hsa-mir-10397/Upstream/3553572; hsa-mir-103a-1/Downstream/11226534;
Nearest TSS
ENST00000502646/Upstream/93159; ENST00000606105/Downstream/631807;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/403737, chr5-CpG: 38/Downstream/749792
Nearby gene
GUSBP1
Upstream sequence
GAAAAGGAAAATGAGTTGTACTTTAAAATTAAATATCATCTGCTTTCTTTTCTACCCCTTCACTTTCCAGACTCCAGGAATCAGCTTGAATATTCTACAG
Downstream sequence
GAGACATTAAAATAAATAATGAGGAGATGAAAACTAGTTTCTTGGAAAAAACATCTCTCATTCCTCTGGAATGAGTTGAATGTCTTTGTTCAAGTTTGTT
Target sequence
AAAG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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