Basic Information
VIS ID
TVIS10019157
Fusion event
HBV-SELENOP integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
p12
Reference genome
GRCh37/hg19
Start
42808252/42808150 (Hg38)
End
42808467/42808365 (Hg38)
Location type
Exon4
Target gene
SELENOP
Nearest miRNA
hsa-mir-10397/Upstream/4250589; hsa-mir-103a-1/Downstream/11143139;
Nearest TSS
ENST00000502646/Upstream/852; ENST00000506791/Downstream/1;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/383205, chr5-CpG: 47/Downstream/115747
Upstream sequence
GAATTAAGTAGTGCAGAACCCAGAATACTGTACTTACTGCAGCACAGGTTTATTTAAAGCAAATGACTAAACTGATTTGCAGAAAATTTTAAAATCAAAG
Downstream sequence
CCTGTAAAAGAGAAAACCTGTCACTCTTCTTCATAGTTAACTTCACAGTCCTAACTATGAATTTCTATAAATCCTGCAGACATAATTCCACTTCCTAAAA
Target sequence
TTAGATGCCTGCAGTATGCACAGGTATCAGCTGGCTTGAAGAAGAGCAACCACAGTCACTGAACCATTGGAGTTTAGCATTGGATCTTGATCTCTTATGCTCCAGGCTGGGGGTTGCTTACATAAGGAGCTTTGGTCCTGGCTCTCTGTTCCTCCCGATGGGAGGAGACAGAGAGCCAGGGCAAGCCCCAGGCTTCTCCACATTGCTGGGGTTGT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate