Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019159
Fusion event
HBV-BHMT integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr5
Cytoband
q14.1
Reference genome
Start
End
78407741/79111918 (Hg38)
Location type
Exon1
Target gene
Nearest miRNA
hsa-mir-10397/Upstream/6233156; hsa-mir-103a-1/Downstream/3728237;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/41931, chr5-CpG: 193/Downstream/123790
Upstream sequence
gcactgagggagggggaaatgaggagaaattgcttaatggccagagaggtttagtttgggatgatgaaaaaggctttggaactccatagaggtgaggttt
Downstream sequence
GTGAGTCTCCAGGGGACCCGAGGGCGCTCTCCTTCCCCTCCCACCTGCTCTGTATCCCAGCCTCTGGGAGCGCAGAGGGGCCCTCGGACCCTGCCTGGTA
Target sequence
GCGCAGCGGGAAGGCTCGCCTAGTCGGTCCGCATCCGTGTCGACCACCTGTCTGGACACCACGAAGATGCCACCCGTTGGGGGCAAAAAGGCCAAGAAG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.