Basic Information
VIS ID
TVIS10019160
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
88549285/89253468 (Hg38)
End
88549285/89253468 (Hg38)
Location type
Intronic
Target gene
LOC110120688 ; MEF2C-AS1
Nearest miRNA
hsa-mir-10397/Upstream/586529; hsa-mir-103a-1/Downstream/763153;
Nearest TSS
ENST00000502646/Upstream/287593; ENST00000508742/Downstream/165339;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/363696, chr5-CpG: 17/Downstream/1156058
Nearby gene
MEF2C-AS1
Upstream sequence
TTTAAAATTTAAATTAGAAACAAAATAAAGTGGCTACTTAACACACAGGCTATATTAGCAAAGCTGCATCTGAAAACTTTTGCATGTATATGGACAAAGA
Downstream sequence
TGTTCATCATATTCCACTGCTGTTTTGACACAGCAATTAGATTTGTGCAGAACAGCAAGATTGTTCCAATTCTATTCTCCCAAACATAAGTCTTAAAAAA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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