Basic Information
VIS ID
TVIS10019163
Fusion event
HBV-chr5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr5
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
137582491/138246802 (Hg38)
End
137582491/138246802 (Hg38)
Nearest miRNA
hsa-mir-10397/Upstream/599153; hsa-mir-103a-1/Downstream/2316869;
Nearest TSS
ENST00000502646/Upstream/33459; ENST00000506710/Downstream/27763;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/4520, chr5-CpG: 26/Downstream/10844
Nearby gene
GFRA3
Upstream sequence
TAGTTAGAGTTTGTTTCTGGGCACCTATGATAAGTATACTAGTCTCAGGAAAAAGCGAAGTCTTATCACTATTCTAAAGTTTCACCTACTTAAAAAAAAC
Downstream sequence
gtttcattcctggatcagctgcttgttagccctatcaccttgcttggcctcactaagcctcactgtaaaaccgggaaaataaaataggatagttatgaaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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