Basic Information
VIS ID
TVIS10019164
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr6
Cytoband
p25.3
Reference genome
GRCh37/hg19
Start
389164/389164 (Hg38)
End
389164/389164 (Hg38)
Nearest miRNA
hsa-mir-10398/Downstream/1001150;
Nearest TSS
ENST00000381078/Upstream/51158; ENST00000469834/Downstream/2575;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/96325, chr6-CpG: 261/Downstream/2024
Nearby gene
IRF4
Nearest cancer related gene
IRF4(TSG, No orient)
Upstream sequence
GAAAAATGACTTACTTTCTGCATATAGGAAGAGATTTGTTCTAGGTATCATACAGTCCAGTTACAAGGTACATCTTCTGAGAACTAGAATCTTCCTTCTA
Downstream sequence
TGTATAATTTTAAAGATTGGCTTTTAAAATACTGAATTGAGGTAAATTCAGCTTTTCTTGCAGACTCTTTACGATAAATGTGAAATTGAAAATGGAAATG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate