Basic Information
VIS ID
TVIS10019165
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr6
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
47045743/47078007 (Hg38)
End
47045743/47078007 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/1880237; hsa-mir-10524/Downstream/5066342;
Nearest TSS
ENST00000381078/Upstream/35644; ENST00000477159/Downstream/231898;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/342428, chr6-CpG: 123/Downstream/230712
Nearby gene
ADGRF1
Nearest cancer related gene
ADGRF1(OG, No orient)
Upstream sequence
CTATTTTTTTCTTTCAACTAGACTGGCCATGATGTAGGCACACTCTTTTAGATTAGAAACACCACCCATTATGCCCATTCATTCCAGCACCCTGACAGTC
Downstream sequence
ttatctcgcttagcctaatgtccttcaggttcatctgtggtgtcacatattgcaggattttcttccattttaaggctgaataatattccatattatgtgt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate