Basic Information
VIS ID
TVIS10019167
Fusion event
HBV-chr6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr6
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
142380419/142059282 (Hg38)
End
142380508/142059371 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/1375399; hsa-mir-1202/Downstream/9043304;
Nearest TSS
ENST00000381078/Upstream/612271; ENST00000454401/Downstream/16551;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/2683841, chr6-CpG: 46/Downstream/28965
Nearby gene
NMBR
Upstream sequence
TTGCATTCAGTGCAAATCCAAAGTCTCAAATGACTTTAGCCTCTGCAATAAGTTAATGTTACTTTAAATTGTTACCTGAGCAGTGAAGCCAGCTGCTTCC
Downstream sequence
AACTCAGTACTTCATAGAATTGGATCAATTAAATCTAATTTCTATTCAAAAGAAGTGCTTCTGTTTTACATCAGGTAAGAAAGAAGGTCATAGAATAATA
Target sequence
CAAATTCTGTGGATTCCTGACCTGGAGGAATCCATGTTTATATCTGTATAACATTGAAGAGGATATAGGCAGAGTATAAAACAATGATA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate