Basic Information
VIS ID
TVIS10019169
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr7
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
50961535/50893838 (Hg38)
End
50961535/50893838 (Hg38)
Nearest miRNA
hsa-mir-1183/Upstream/6012038; hsa-mir-10399/Downstream/6061947;
Nearest TSS
ENST00000635602/Upstream/27091; ENST00000582616/Downstream/123625;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/99897, chr7-CpG: 148/Downstream/421776
Nearby gene
COBL
Upstream sequence
catgcgccaccatgcccggctaatttttttatttttagtagagatggggtttcaccatgttggccaggctgatctcgaactcctgacctcaagtgatcct
Downstream sequence
tgcaaatgaaaacattttttaaaaGTCCAAAATGATTGAAAGATAGCATCAAGATAAcacagggtggaagaagagatttacagtgtgtataattgacaaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate