Basic Information
VIS ID
TVIS10019170
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr7
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
54947299/54879606 (Hg38)
End
54947299/54879606 (Hg38)
Fragile sites / regions
FRA7A
Nearest miRNA
hsa-mir-1183/Upstream/9997806; hsa-mir-10399/Downstream/2076179;
Nearest TSS
ENST00000635602/Upstream/119632; ENST00000459688/Downstream/139415;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/46038, chr7-CpG: 23/Downstream/8974
Nearby gene
LOC100996654
Upstream sequence
CCAGCAACTAGCCCCAACATGCCAAGGACTGGTATTCATTCTCTTAATCATTATTATAATCATCTTACTGCCTTACATCAAAATACTATGTTACATGTCA
Downstream sequence
CACCCCGCTAGTAGAAATGCAATGTTTCAAGGGAGGCTAAGAGATGGAGCAATTTACTCTTCCTTGGGGGTGAGAGGGACTGCCCGGCTGAGAGGTAACA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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