Basic Information
VIS ID
TVIS10019172
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr7
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
92719247/93089934 (Hg38)
End
92719336/93090023 (Hg38)
Nearest miRNA
hsa-mir-10525/Upstream/885836; hsa-mir-10399/Downstream/392737;
Nearest TSS
ENST00000635602/Upstream/235025; ENST00000438395/Downstream/27939;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/46232, chr7-CpG: 28/Downstream/484750
Nearby gene
SAMD9
Upstream sequence
TTGTAAATGCATTCCTACCATCAGACCCCAAGGGAGACTCCTGCTGGTGTTTGAGGTCTTtaactggcacatgaggcaggcagtactcatagggtgcaat
Downstream sequence
tcagtttctgggctcttctttgatgagagactttttttttttttcaattatcatggcttctatctcattacttgtttttagtctattcaggttttgtatt
Target sequence
aagtgttcccttttcctgtgtctttgaatagtttatggagtattcatattagttctttaaatatttggtagaatttagcagtgaaatca
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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