ADRA1A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019173
Fusion event
HBV-ADRA1A integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
26660825/26803308 (Hg38)
End
26660825/26803308 (Hg38)
Location type
Intron2
Target gene
ADRA1A
miRNAs that regulate target gene
hsa-mir-484
Nearest miRNA
hsa-mir-124-1/Upstream/1457834; hsa-mir-10400/Downstream/245545;
Nearest TSS
ENST00000518652/Upstream/165778; ENST00000521869/Downstream/51266;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/224039, chr8-CpG: 202/Downstream/60817
Upstream sequence
CAGATACTTTTTTCTCCAAATCCTTTATTCTTTCCACTTAGGCTAAAATACTGTCTAAGCCACTGCCTTCTGGAAAAGAATACATATTTCCCTCTATACC
Downstream sequence
cagtatatgactgtatcaaaatatgtcatgtactccataaatgtatcctactatgtatccataaaaattaaaaatgaaaaaagatgactcttgaactata
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate