Basic Information
VIS ID
TVIS10019175
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
96892424/95880196 (Hg38)
End
96892513/95880285 (Hg38)
Fragile sites / regions
FRA8B
Nearest miRNA
hsa-mir-12123/Upstream/807200; hsa-mir-10400/Downstream/2513360;
Nearest TSS
ENST00000518652/Upstream/81801; ENST00000520575/Downstream/112818;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/610677, chr8-CpG: 118/Downstream/264250
Nearby gene
LOC100500773
Upstream sequence
GCGGGTCACCATGGCAACCCAGCAGGGCACCGCGCAGTGACCCCCTCCCTCCCCTCCAGTGGGATGGTCAAGGCAGGGAGGCGGTAGCGGCTCCTCCTGA
Downstream sequence
catgcctgtaattccagctactcaggaggctgaggcatgagaatcgcttgaacccaggagacagaggttgcaaccactgcacttcagtctgggtgatgga
Target sequence
cttgaggtcaggagttcaagacaagcctggccaacatggcaaaaccttgtctctactcaaaatacaaaaattagctgggcatgctagtg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate