RIMS2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019177
Fusion event
HBV-RIMS2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
104759925/103747697 (Hg38)
End
104759925/103747697 (Hg38)
Location type
Intron2
Fragile sites / regions
FRA8A
Target gene
RIMS2
miRNAs that regulate target gene
hsa-mir-1-3p ; hsa-mir-335-3p ; hsa-mir-376b-3p ; hsa-mir-376a-3p ; hsa-mir-3065-3p
Nearest miRNA
hsa-mir-12123/Upstream/593008; hsa-mir-10400/Downstream/736672;
Nearest TSS
ENST00000518652/Upstream/246021; ENST00000395361/Downstream/18530;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/246012, chr8-CpG: 51/Downstream/475459
Upstream sequence
GCTTGACAACTTTCTTTAATTATTGATTCCTCCTTTATTTTGTAAAACTTTCTTTTCATTAAATCTATAACCTCCAGAATGGGgatagagagatagatag
Downstream sequence
atattactccaagatttttggcctgaggcaaactggaagaatggtaagttgccattaactgttatgggtaagactgcaggtggagcaatttccgtgtaaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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