SUGT1P1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019179
Fusion event
HBV-SUGT1P1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr9
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
33506283/33506285 (Hg38)
End
33506816/33506818 (Hg38)
Location type
Intron1
Target gene
SUGT1P1
Nearest miRNA
hsa-mir-101-2/Upstream/38350; hsa-let-7a-1/Downstream/2101276;
Nearest TSS
ENST00000422679/Upstream/32355; ENST00000496561/Downstream/7955;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/58459, chr9-CpG: 36/Downstream/4042
Upstream sequence
CCTTTATTCCATAGAGACCCTTAATCATGGTGAAAACTGGGTGCACCTGCCTAAGATTCTTCACTGTACCTCTGCCAAATCTGCTACAGAGAGTCCAATG
Downstream sequence
aaaaaaaagaaaaTGTAGAAGATGGTATGACTCATGTTTTTTCAGGGGTTTCAAGTATGTATCAAGGCACTAGATAACTTGACTCTGGAATTTCCTAGGA
Target sequence
taattagcttagtgtgatggcacgtgcctgtattcccagctactcaggaggcagaggcagaaggacagcttgagctcaggaattcaaggctgcagtgaactataatggtgccattgcactcaagtctgggtgaaagagtaaggctctgtgcccccaggtccaaaaagaagaaaaaaaaagaaaagaaTTTAGGCAGGAAACTTTTCTATTGCTCTTAAAAGTAATAAGGCCTAGAAATGCAGAGGATGAggtcag
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate