FUBP3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019181
Fusion event
HBV-FUBP3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr9
Cytoband
q34.12
Reference genome
GRCh37/hg19
Start
133493180/130617793 (Hg38)
End
133493180/130617793 (Hg38)
Location type
Intron7
Target gene
FUBP3
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-128-3p
Nearest miRNA
hsa-let-7a-1/Upstream/376305; hsa-mir-126/Downstream/8504;
Nearest TSS
ENST00000422679/Upstream/36698; ENST00000487406/Downstream/2621;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/37684, chr9-CpG: 632/Downstream/41354
Upstream sequence
ATAAAGAGACTGCACTGATAAGAGTAGCCAGGGTGAGCCAACTGTGGGCCCTTCCTTTCTGGAGTATGGCAGAGGGGGTGAAAAGGCAGGTGTTCATTAC
Downstream sequence
acttcaaaAGTAAGTTATTCTTTGGTAAGTCATGAAATAATAGCCATTAAACTCTAATCAGGTTTTATTAGCATTAACAACACTGAGTTTATACTATATC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate