FANK1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019184
Fusion event
HBV-FANK1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr10
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
127585843/125897274 (Hg38)
End
127585932/125897363 (Hg38)
Location type
Intron1
Fragile sites / regions
FRA10D ; FRA10F ; FRA10A ; FRA10B
Target gene
FANK1
Nearest miRNA
hsa-mir-107/Upstream/77452; hsa-mir-202/Downstream/3945936;
Nearest TSS
ENST00000439456/Upstream/735; ENST00000494896/Downstream/75763;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/305, chr10-CpG: 132/Downstream/490223
Upstream sequence
AACCTATGTTGAGCCTTGCTTACCAGCAAAGAATATTTTTAATGTGGATATCTAATTCTAAAGTCTGTTCCATTAGAAGCAATTGGCACATCTTTCTATA
Downstream sequence
GGACTTTGTTTCAAGGCCTTTCTTTCTCTGCCCCGCCTAAGCTGTCTTATTGTTCCTTTTGTTCTCAAAATAAGGGGAGTGTTTTGTATGGAGACTTAAA
Target sequence
ATGTATGGCAAAAGTTGTGCAGTTTTGAGTTATCAGATCTAAACACGAGCTCTAACTTACTATTTTTGTTGTTGTTTTTACCTTTCCAG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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