Basic Information
VIS ID
TVIS10019185
Fusion event
HBV-chr11 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr11
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
48205543/48183991 (Hg38)
End
48205769/48184217 (Hg38)
Nearest miRNA
hsa-mir-129-2/Upstream/87133; hsa-let-7a-2/Downstream/8559656;
Nearest TSS
ENST00000527297/Upstream/38913; ENST00000309562/Downstream/32593;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/202373, chr11-CpG: 17/Downstream/695928
Nearby gene
OR4B1
Upstream sequence
GGGCAGATGGTATAAACATTGCAAAGCTATGTACCCGTGACAGTGTAAATGAAAGGTTTGATTGTGCTAACTCTCCTGCACTTTCTTTCTGTGTTCCTGT
Downstream sequence
ttaaacctggcggatcaagagatccgccaacctcggcctctcaaaatgctgggattaccggtgtgagctaccgcgcctggccTGTCTTCATTATTCTCTC
Target sequence
ttgtctttcttcttttttttttttttgagatggagtctcactctgttgcccaggctggagttgagtggcacaatcttggctcactgcaacctctgcctcctgggttcaagcgatcctcctgcctcagcctcctgggtagctgcgattacaagaatgtgccaccaagcccagctaatttttgtagttttagtagagacagggtttcaccatattggccaggctggtc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate