VISDB Viral Integration Site DataBase

VIS ID

TVIS10019186

Fusion event

HBV-SERPING1 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr11

Cytoband

q12.1

Reference genome

Start

End

57373685/57606212 (Hg38)

Location type

Intron4

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-1273g-3p ; hsa-mir-498 ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-6720-5p ; hsa-mir-7703 ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6776-5p ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-6742-3p ; hsa-mir-6849-3p ; hsa-mir-508-5p ; hsa-mir-629-3p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-873-3p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-4284 ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-4772-3p ; hsa-mir-1304-3p ; hsa-mir-6890-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p

Nearest miRNA

hsa-mir-129-2/Upstream/862023; hsa-let-7a-2/Downstream/34986;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/37991, chr11-CpG: 19/Downstream/40715

Upstream sequence

GGACTGGGGCCTGAGACGGAATgggggcgggccccgggcggggtgggggccccTGGGCTCCCAGGGTGGGAGCTGGCTCCGAGGCTGGCTGGCTCCGCAG

Downstream sequence

GGTAAGGGTGCCCTTAGCCAGTTAGTCTTCCCATTCTGGGTCCTTCTTCCCCTCCTGGCTTCAAAGCCCACTTAACCCCAAGTTCTACAATCGGATCTCA

Target sequence

CCCAGACCTGGCCATAAGGGACACCTTTGTGAATGCCTCTCGGACCCTGTACAGCAGCAGCCCCAGAGTCCTAAGCAACAACAGTGACGCCAACTTGGAGCTCATCAACACCTGGGTGGCCAAGAACACCAACAACAAGATCAGCCGGCTGCTAGACAGTCTGCCCTCCGATACCCGCCTTGTCCTCCTCAATGCTATCTACCTGAGT