NDUFV1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019187
Fusion event
HBV-NDUFV1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr11
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
67379451/67611980 (Hg38)
End
67379839/67612368 (Hg38)
Location type
Intron8
Fragile sites / regions
FRA11H
Target gene
NDUFV1
miRNAs that regulate target gene
hsa-mir-484
Nearest miRNA
hsa-mir-10392/Upstream/121665; hsa-let-7a-2/Downstream/420496;
Nearest TSS
ENST00000527297/Upstream/261; ENST00000511677/Downstream/17553;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/4725, chr11-CpG: 24/Downstream/3698
Upstream sequence
AGGATCCTGACCCACATGGAGTTTACAGTCTTGGCAGTATGGATCGGGCAGGTAGAAAAAGACACCAAATTACACAGCCAACAGCATCTTTATAATTGTT
Downstream sequence
CAGGGTCTGATCCGCCACTTTCGGCCGGAGCTCGAGGAGCGGATGCAGCGGTTTGCCCAGCAGCATCAGGCCCGGCAGGCTGCCTCTTAGCCCACCACCC
Target sequence
GAGCATCGGGCAGGTTGGGGGCTTGCTTGCTGTGGCTTCATTTAACCTCCTCCCCACCACGTGGCCTGCAGCCCTCAAGCGCCGCCCCACATCCTGGCTGGGGAGATCATCAGGCCCTCTCTTGTGGCTGTGGCTGCAGGTGTGGACTGGATGAACAAGGTGATGGCACGTTTCGTGAGGGGGGATGCCCGGCCGGCCGAGATCGACTCCCTGTGGGAGATCAGCAAGCAGATAGAAGGCCATACGATTTGTGCT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate