Basic Information
VIS ID
TVIS10019189
Fusion event
HBV-chr13 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr13
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
86465157/85891022 (Hg38)
End
86465157/85891022 (Hg38)
Nearest miRNA
hsa-mir-1297/Upstream/8192906; hsa-mir-1267/Downstream/1727643;
Nearest TSS
ENST00000623511/Upstream/84339; ENST00000445967/Downstream/169791;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/2011260, chr13-CpG: 121/Downstream/1780292
Nearby gene
SLITRK6
Upstream sequence
TCTTTCTCCCGTTCTCTGCCATAGAGTAATGCAGAAGTCACTGACCATCAAGAAATCCAGGATGATAAGCGCCAGAGGGTCCTTCTTCATTATCAAAACC
Downstream sequence
tccatccccttagtatattttaaagtgcacaatactgtattgttaactatgaatactatattgtacagatctctagaatttattaaccttgcataactga
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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