Basic Information
VIS ID
TVIS10019190
Fusion event
HBV-chr13 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr13
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
110076481/109424134 (Hg38)
End
110076481/109424134 (Hg38)
Nearest miRNA
hsa-mir-1267/Upstream/1892886; hsa-mir-4502/Downstream/916824;
Nearest TSS
ENST00000623511/Upstream/23438; ENST00000416090/Downstream/304148;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/282783, chr13-CpG: 604/Downstream/358132
Nearby gene
LINC00399
Upstream sequence
atcaattatttctttcattgatcaaacttttgttgtattttaaatggtcattgttgtacccaaggtcaacacatttttctcctttataatattctaagag
Downstream sequence
ttttgaagttttatattttacatttagatctatgattcattttgagtaaatcctgggtaggcaaaaataacaaatgtccacttcaCCTAGACAAAGGAAT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate