Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019191
Fusion event
HBV-AKAP6 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
Start
End
32953997/32484791 (Hg38)
Location type
Intron2
Target gene
miRNAs that regulate target gene
hsa-mir-1257 ; hsa-mir-4687-3p ; hsa-mir-7974 ; hsa-mir-583 ; hsa-mir-1276 ; hsa-mir-4311 ; hsa-mir-1303 ; hsa-mir-5096 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-7641 ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-4755-3p ; hsa-mir-4695-3p ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-483-5p
Nearest miRNA
hsa-mir-208a/Upstream/1470049; hsa-mir-1185-1/Downstream/4467518;
Nearest CpG islands
Upstream sequence
tccttatgaattgccatcctcatcttctctcaggggtaaacaccctgaatccctcccagtactcccagatctgaggtaggtgttccttctccatgtcact
Downstream sequence
GGCGAACATCAGTGGGATAAGGTAAAATGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACAGGGGCTAAGCCTCTTTTTACCAGCTCTGAGGTGATT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.