Basic Information
VIS ID
TVIS10019193
Fusion event
HBV-chr14 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
99579101/99112764 (Hg38)
End
99579101/99112764 (Hg38)
Nearest miRNA
hsa-mir-1260a/Upstream/3974778; hsa-mir-1185-1/Downstream/996655;
Nearest TSS
ENST00000550708/Upstream/184959; ENST00000423922/Downstream/45652;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1893155, chr14-CpG: 53/Downstream/5304
Nearby gene
BCL11B
Nearest cancer related gene
BCL11B(OG, No orient)
Upstream sequence
AGCTGCTGCTGCTGCTAAAAGTCGGCATTTATTGAACACATACACAGATTGAAGAAGGAGTTTTGCCATCTGCTTTTGAGGATGACTTTTGTCCAACTTC
Downstream sequence
ttattttcagacttttttgtctcctaataaatgtacatgatactattaattttcctctgagtacagatttacctgtatcgctcaggtttttatatgtaat
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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