AGBL1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019194
Fusion event
HBV-AGBL1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr15
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
87164362/86621131 (Hg38)
End
87164362/86621131 (Hg38)
Location type
Intron21
Target gene
AGBL1
Nearest miRNA
hsa-mir-10393/Upstream/795401; hsa-mir-11181/Downstream/1325075;
Nearest TSS
ENST00000557528/Upstream/303958; ENST00000560803/Downstream/10005;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/780247, chr15-CpG: 36/Downstream/1634292
Upstream sequence
TCTCAAGATGGATGAAACAGGTTTCATTTCTTGTCCTATAACTAGGAAATCTTTCATAATTACTTAGAAGTATTTTACACACCACCTCAGATAAAATACT
Downstream sequence
ACAACTGTGCTTGCAGATTTCATTTGGTTATAGGGCTGTGCTTTTACATCTTCCTTAATTGTTATAATATGTTGATCAAGGATGACTCCTCTGCTATAGA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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