Basic Information
VIS ID
TVIS10019195
Fusion event
HBV-chr15 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr15
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
96346536/95803307 (Hg38)
End
96346536/95803307 (Hg38)
Nearest miRNA
hsa-mir-10393/Upstream/2898832; hsa-mir-1302-10/Downstream/529954;
Nearest TSS
ENST00000557528/Upstream/164813; ENST00000560176/Downstream/187275;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/476214, chr15-CpG: 151/Downstream/518345
Nearby gene
NR2F2-AS1
Upstream sequence
GAGGGAAATGGCCCGCAGAGCACCGGCGGCACGCCTCTAACCCCAACCACTGTGGCTCTCGGTCTGGGGGACACTCACCAGCTGTGGAGCACGACGCAAG
Downstream sequence
ACAGGAAATAAAAAGTAGGTCAATAGGATTTTATCTACTAAATTGTTGAAACTAGCGCTACAGAATGGTTTCTGATTAATTTTCTGTGAGTTAGTAAATG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate