VISDB Viral Integration Site DataBase

VIS ID

TVIS10019196

Fusion event

HBV-chr16 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr16

Cytoband

p13.12

Reference genome

Start

End

13383687/13289830 (Hg38)

Location type

Intronic

Target gene

LOC107984137 ; SHISA9

miRNAs that regulate target gene

hsa-mir-4531 ; hsa-mir-7847-3p ; hsa-mir-4764-5p ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-1287-5p ; hsa-mir-3135b ; hsa-mir-3605-5p ; hsa-mir-764 ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-1265 ; hsa-mir-3914 ; hsa-mir-5096 ; hsa-mir-7641 ; hsa-mir-197-3p ; hsa-mir-4695-3p ; hsa-mir-4716-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-1911-3p ; hsa-mir-4261 ; hsa-mir-873-5p ; hsa-mir-1285-5p ; hsa-mir-4496 ; hsa-mir-552-3p ; hsa-mir-5197-5p ; hsa-mir-374b-5p ; hsa-mir-374a-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-508-5p ; hsa-mir-3145-5p ; hsa-mir-548l ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-3187-3p ; hsa-mir-653-3p ; hsa-mir-4529-5p ; hsa-mir-6847-3p ; hsa-mir-539-5p ; hsa-mir-3190-5p ; hsa-mir-3919 ; hsa-mir-4756-3p ; hsa-mir-548o-3p ; hsa-mir-5680 ; hsa-mir-1323 ; hsa-mir-193b-3p ; hsa-mir-193a-3p ; hsa-mir-551b-5p ; hsa-mir-497-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-7156-3p ; hsa-mir-6516-3p ; hsa-mir-1206 ; hsa-mir-1272 ; hsa-mir-3662 ; hsa-mir-8084 ; hsa-mir-642a-5p ; hsa-mir-6883-3p ; hsa-mir-6515-3p ; hsa-mir-6734-3p ; hsa-mir-877-3p ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-454-5p ; hsa-mir-4277 ; hsa-mir-584-3p ; hsa-mir-6505-5p ; hsa-mir-4789-5p ; hsa-mir-7153-3p ; hsa-mir-129-5p ; hsa-mir-1304-3p ; hsa-mir-4474-5p ; hsa-mir-483-3p ; hsa-mir-8055

Nearest miRNA

hsa-mir-1225/Upstream/569459; hsa-mir-11401/Downstream/1014137;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/385997, chr16-CpG: 56/Downstream/630064

Nearby gene

Upstream sequence

CGGGCGGTGTGTGGCTGAAGGGCAAGAGAAAGGAGAGACTGCGGCTGGGAACCCATATGGGAATGCTGAGTGTCCAGGCCACCCAGTAAAGGGTCAGGGA

Downstream sequence

catgatccccaaattctcttttgcctaagctagtttgaattgtgtttatactttctaataatatttgaataatcctgactaacacTGACATCACTAGGTA