Basic Information
VIS ID
TVIS10019197
Fusion event
HBV-chr16 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
32231129/32219808 (Hg38)
End
32231218/32219897 (Hg38)
Nearest miRNA
hsa-mir-1225/Upstream/1325823; hsa-mir-11401/Downstream/1943681;
Nearest TSS
ENST00000527434/Upstream/31475; ENST00000563025/Downstream/32822;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/16847, chr16-CpG: 17/Downstream/21351
Nearby gene
TP53TG3D
Upstream sequence
ATTTCTGGGAGCATTGAGTTTCAGAATGAATCTGCAAGCCCCAAACTCTCATGTCTTTTTCTTTGATCACTGTAAGCAACTCTAACTTTcttttcagaca
Downstream sequence
TTCTTTTTCTCTTTAATGCACAAGCAATGGATAAAACATTTCAAAGATCCCTACAGATGTTTCTTCACTTGAAATATTGTTCACATTACAATGAGAAGGA
Target sequence
ATGCAAAATACACTGTTTCTAAATTAAATTTTTTTGTAACAAAGAGTTTTTGAGTTCCCCTCATGAAATTTTAATAAATCATTAATTTC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate