Basic Information
VIS ID
TVIS10019199
Fusion event
HBV-chr16 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
33172089/33270848 (Hg38)
End
33173073/33271832 (Hg38)
Nearest miRNA
hsa-mir-1225/Upstream/2376863; hsa-mir-11401/Downstream/891746;
Nearest TSS
ENST00000527434/Upstream/64386; ENST00000611321/Downstream/31907;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/75785, chr16-CpG: 17/Downstream/20465
Nearby gene
TP53TG3
Upstream sequence
TTTGTGAATGGAAATGTAGCAGGGCTTTTGCCTTTTTTCCTTGTTCATGAAAAACAAGTCGCGCTTGGGGAGCAAGTATTCCCGTTCAACTGCTGTCACT
Downstream sequence
GCTTTGTACAGCAACCAACACGAAAATGTTAACATACCACTGCAATAAATAGAATAAAAACATGTTCAGAAAGACTTAGAAACTCATTAAAGAATGGATA
Target sequence
ATGCAAAATACACTGTTTCTAAATTAAATTTTTTTGTAACAAAGAGTTTTTGAGTTCCCCTCATGAAATTTTAATAAATCATTAATTTCTTCTTTTTCTCTTTAATGCACAAGCAATGGATAAAACATTTCAAAGATCCCTACAGATGTTTCTTCACTTGAAATATTGTTCACATTACAATGAGAAGGATGGAATAAAACATAAAAAAGATAGGCAgttttgttttgttttgttttgttttgtttttaagatgga
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate