SERPINF2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019201
Fusion event
HBV-SERPINF2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr17
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1650807/1747513 (Hg38)
End
1650807/1747513 (Hg38)
Location type
Intron7
Target gene
SERPINF2
miRNAs that regulate target gene
hsa-mir-224-5p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-3191-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-6832-3p ; hsa-mir-6892-3p ; hsa-mir-6887-3p ; hsa-mir-4687-5p
Nearest miRNA
hsa-mir-22/Upstream/33526; hsa-mir-10226/Downstream/302395;
Nearest TSS
ENST00000595228/Upstream/4487; ENST00000571149/Downstream/14446;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/13315, chr17-CpG: 18/Downstream/6640
Upstream sequence
CTCttttttttttttttagatggagtcttcctctgtagcccaggttggagtgcaatggcgtatctctcagctcactgcaacctccgcctcctgggtttaa
Downstream sequence
TGCGCTCCTCCTCCTCTCAGATCCCCCACCCTGTAGGCTGAGCTGGGACGTGCAGGCCtttttgttttttgagacaagtctcgctctgtcacccagggtg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate