VISDB Viral Integration Site DataBase

VIS ID

TVIS10019202

Fusion event

HBV-CXCL16 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr17

Cytoband

p13.2

Reference genome

Start

End

4638804/4735509 (Hg38)

Location type

Intron2

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-744-5p ; hsa-mir-92a-3p ; hsa-mir-6870-5p ; hsa-mir-6516-5p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-455-3p ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6835-5p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-6499-3p ; hsa-mir-4537 ; hsa-mir-1273f ; hsa-mir-3192-5p ; hsa-mir-5694 ; hsa-mir-7851-3p ; hsa-mir-490-3p

Nearest miRNA

hsa-mir-1253/Upstream/1986474; hsa-mir-10226/Downstream/234193;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/2721, chr17-CpG: 134/Downstream/3234

Upstream sequence

gggaaatatgtcagaggcattggaagcagagcaactttaacttgaataggggctgggtaaaatgatgctgagacctgctgggccacattcctgggaggtt

Downstream sequence

TGGAAAGGAAAGAAATGAGGAATCAGGACTATCAGGAGACAAGGTGAAAAAGCAGATAGAGGtgtaggggagaaaaagtaatatcttttcctcacccatc

Target sequence

AAAGGATAAAGAAATTGAGAGATGAGCTCTGAGATCAAGGACAGTGTTTGGGGGATGATAGCTTGAACTAGGGAATCAGATGAAGACATcaacactatgacctggcccacagtaggtgctcagtgaaaatttgtgaattgaatgaCTGGCCCTCACCTCCCTCCACAGCTTCATCTCCCACTAGCTTGCTCTAGCCATCTTCTCCATGATGTTGCTCCAAGCACTAGTCCTTGTGCCTGTGGTGGCTTCCTTCCC