VISDB Viral Integration Site DataBase

VIS ID

TVIS10019203

Fusion event

HBV-ASGR2 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr17

Cytoband

p13.1

Reference genome

Start

End

7005407/7102088 (Hg38)

Location type

Exon1

Target gene

miRNAs that regulate target gene

hsa-mir-2467-3p ; hsa-mir-3197 ; hsa-mir-4673 ; hsa-mir-6847-5p ; hsa-mir-4645-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-4695-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-137 ; hsa-mir-4468 ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-451b ; hsa-mir-5586-3p ; hsa-mir-3133 ; hsa-mir-1276 ; hsa-mir-4514 ; hsa-mir-4692 ; hsa-mir-632 ; hsa-mir-4288 ; hsa-mir-6828-3p ; hsa-mir-346 ; hsa-mir-3120-5p ; hsa-mir-767-3p ; hsa-mir-5695 ; hsa-mir-6769a-3p ; hsa-mir-1294 ; hsa-mir-4316 ; hsa-mir-4446-3p ; hsa-mir-4675 ; hsa-mir-4677-3p ; hsa-mir-4721 ; hsa-mir-4741 ; hsa-mir-7974

Nearest miRNA

hsa-mir-1253/Upstream/83717; hsa-mir-10226/Downstream/121209;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/57537, chr17-CpG: 68/Downstream/71614

Upstream sequence

CGATGCCAAAGGCGTCGCCCGGGTcgccgccgccgccgccgctgccgGCCCGCAGCAGCTTCTTGTTCCGCAGCGCCTTCTTGTGCAGCACGTCGCAGTA

Downstream sequence

CTTGTAGTTGTGCCTATAGTCTGTGCCATCCACCCATTTCCAAGAGCCATCACTGTCCGTGAGACCTATCCAGGTATTGAAGGGGTTCGTGTGTTGTACA

Target sequence

CCTAAGGAGGCAAGAGAAAACTCGGACTCTGCCACGGTGGTGAGAAAGCGACTTACCCATCCTCCTCCTCTTCATGACCATTTTCCTTGAAGGCCGAGAGTGGAGCTGGGGTGTGCCCTGCTACCCAGTCTGGGGAGAACCCAACCGCAGAGAAAGATGTTTCCTATGCCCAGTCCCAGCAACCCTCACCCCCAGCCCAGAAGAGCACAGCTTTGGAGGGGTTGGAGTCTGGGGAGGAGAGGATTGGGGAATTTG