VISDB Viral Integration Site DataBase

VIS ID

TVIS10019204

Fusion event

HBV-SYNRG integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr17

Cytoband

q12

Reference genome

Start

End

35944109/37584001 (Hg38)

Location type

Intron15

Target gene

miRNAs that regulate target gene

hsa-mir-1180-3p ; hsa-mir-1304-3p ; hsa-mir-3191-5p ; hsa-mir-4284 ; hsa-mir-29b-1-5p ; hsa-mir-4772-3p ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-518c-5p ; hsa-mir-6817-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-498 ; hsa-mir-24-3p ; hsa-mir-4783-3p ; hsa-mir-5693 ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-6875-3p ; hsa-mir-22-5p ; hsa-mir-1184 ; hsa-mir-5584-3p ; hsa-mir-5694 ; hsa-mir-383-5p ; hsa-mir-148a-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-195-5p ; hsa-mir-6838-5p ; hsa-mir-15a-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-193b-3p ; hsa-mir-193a-3p

Nearest miRNA

hsa-mir-1180/Upstream/549501; hsa-mir-10226/Downstream/30930;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/70390, chr17-CpG: 69/Downstream/25036

Upstream sequence

gaattcaatggagtggagtggaatggaatcgaaaggaatggaatgggaaggaatggaattgaacggagtgcagtggagtggagtggaatggaatgcaaag

Downstream sequence

GTTGAATTTTTAAAAATAATGTGGTAACAATTATGCAAATACAAGACTCATTTCAACTGCTAAATGTTCAAAAGAACAACCAAACCCCAACCTCCAATCC

Target sequence

TTCACCTTATAATTTTCATTTTTAGATATGTTTTTCCTTTCTAATCTCAGCCTGATTGCTAATATCTGTTTTCTTTTCAATCTTGTATATTTTATTTTGGGGCATACTTTTGGAATGGGAATCTTAAGTGAAATTAACAGAACAGAGTCAAAGTTGTCCCGGAAAAATCAAGAACTGGTTACTATGCCAGTGATTATTCCCTCTTGATATCACCCATGAAAGGTACTATAATACAAGGGTTCAAGATAAAATTTA