Basic Information
VIS ID
TVIS10019206
Fusion event
HBV-chr18 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr18
Cytoband
q12.2
Reference genome
End
36249890/38669926 (Hg38)
Nearest miRNA
hsa-mir-1-2/Upstream/1012711; hsa-mir-122/Downstream/952197;
Nearby gene
Upstream sequence
tatattttattggagtggaacagctcatgtcctcggtctcttgcctcggcaAAGATTAGAttagggttaggtgagggtgagggtgagggtgagggtgagg
Downstream sequence
ATGAAGAATTATAGTTTTAATATTCAAAGACTCATATCCTAATGTACAGTTAATATTATTGCATTAAGAAAAATTATGGTATGTAATATTTTTGTTAATC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate