Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019208
Fusion event
HBV-GDF1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr19
Cytoband
p13.11
Reference genome
Start
End
18989268/18878459 (Hg38)
Location type
Intron2,Intron2,Exon1,Exon1
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10395/Upstream/491825; hsa-let-7e/Downstream/556604;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/7715, chr19-CpG: 152/Downstream/16763
Upstream sequence
GGTTTAATAAATAAATAACATTGCCCAGAgcagtggcttacacctgtaatcccagcactttgggaggccaaagtgggaggacagcttgaggccaggagtt
Downstream sequence
AAACTCAGAGGCCAGGATGTCTCGGCCCAGATGGAGCCTGGGTTCTCTCTGTGGCCCTTGGCGTTCCTTCCTCCCCAGCCCCACTGCCACCAGCTCCAGT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.