VISDB Viral Integration Site DataBase

VIS ID

TVIS10019209

Fusion event

HBV-ZNF507 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr19

Cytoband

q13.11

Reference genome

Start

End

32864158/32373252 (Hg38)

Location type

Intron5

Target gene

miRNAs that regulate target gene

hsa-mir-320b ; hsa-mir-7-5p ; hsa-mir-92a-3p ; hsa-mir-19b-3p ; hsa-mir-17-5p ; hsa-let-7b-5p ; hsa-mir-190a-3p ; hsa-mir-3681-5p ; hsa-mir-3915 ; hsa-mir-3928-3p ; hsa-mir-5011-5p ; hsa-mir-6849-5p ; hsa-mir-8056 ; hsa-mir-18a-5p ; hsa-mir-30a-5p ; hsa-mir-106a-3p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-18b-5p ; hsa-mir-4495 ; hsa-mir-4681 ; hsa-mir-4735-3p ; hsa-mir-4747-5p ; hsa-mir-4802-3p ; hsa-mir-5196-5p ; hsa-mir-590-3p ; hsa-mir-1301-3p ; hsa-mir-1286 ; hsa-mir-4660 ; hsa-mir-4722-5p ; hsa-mir-4775 ; hsa-mir-5047 ; hsa-mir-496 ; hsa-mir-374b-3p ; hsa-mir-3154 ; hsa-mir-1304-5p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-1224-5p ; hsa-mir-1290 ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-410-3p ; hsa-mir-605-5p ; hsa-mir-29b-2-5p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-493-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-873-5p ; hsa-mir-3910 ; hsa-mir-3714 ; hsa-mir-124-3p ; hsa-mir-506-3p ; hsa-mir-6749-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-532-3p ; hsa-mir-1224-3p ; hsa-mir-6513-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-3150b-5p ; hsa-mir-3150a-5p ; hsa-mir-5010-3p ; hsa-mir-587 ; hsa-mir-6834-3p

Nearest miRNA

hsa-mir-10395/Upstream/11973898; hsa-let-7e/Downstream/2749448;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/27318, chr19-CpG: 142/Downstream/31817

Upstream sequence

AAGGTTGTTTGATTACAAACAAAGAAAACTGGCTCTAAGCAACTTGCTATCCTTCCAACAAGTTCTTTTTCTACTTAATATTAACTAAAGAATCAGCTGA

Downstream sequence

tcacaaggtctctgccctcatgacctagtcaccttccaaaggccccacctcttaatactatccctttggaggttaagtttccacataggaatttcggtgg