Basic Information
VIS ID
TVIS10019211
Fusion event
HBV-chr20 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr20
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
11412440/11431792 (Hg38)
End
11412440/11431792 (Hg38)
Fragile sites / regions
FRA20B
Nearest miRNA
hsa-mir-103a-2/Upstream/782097; hsa-mir-1-1/Downstream/7038823;
Nearest TSS
ENST00000382410/Upstream/130267; ENST00000450368/Downstream/109855;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/756829, chr20-CpG: 37/Downstream/255082
Nearby gene
LOC339593
Upstream sequence
ggaactcctggttgtcagggttttggacttggactgaatgacaccaccggctttcctggctctcccactggcagatggcagattgtgggacttctgggct
Downstream sequence
AGATTTTGGTTTGGCTGGCACAGAAGTATGACCACAAGATGGACCTAAAATATGCACATTTGTAAGATTTTCCCCCATGGTAAGTAAATAGTTGGCTCTC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate