CELA3A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019213
Fusion event
HBV-CELA3A integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p36.12
Reference genome
GRCh37/hg19
Start
22328526/22002033 (Hg38)
End
22329495/22003002 (Hg38)
Location type
Intron1
Fragile sites / regions
FRA1A
Target gene
CELA3A
Nearest miRNA
hsa-mir-12136/Upstream/1013601; hsa-mir-101-1/Downstream/263237;
Nearest TSS
ENST00000473358/Upstream/373; ENST00000400271/Downstream/4448;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/64249, chr1-CpG: 22/Downstream/22422
Upstream sequence
agctcctcgactcaagcttgtaccaattccattcaatcaGAGCGCCTTGTAGCAGCATAATCCAACTAATTTAAAAGTATGAAATTGTAAAAATACGAAC
Downstream sequence
CCTCAGGCTATGGCCCACCTTCCTCTCACTCTTCCAGCCGCGTTGTCCATGGTGAGGATGCGGTCCCCTACAGCTGGCCCTGGCAGGTAAGAGCAATAGC
Target sequence
taccaCTCCAACTCTCCTCTCACTCCCCCTACCTGGCTCCATATTCTATGCTCTGGCCTTTTCCTGGTCTCTCTGCCATATTACATTCCAGCTCAGGGCCACCTCTTCCAAACAGCCTCCCTTGACTGACAATAATGGtaacagataacattgattgagtgcttactatgccaggcagaatgtttagggattttcttatactttctcatgtaattctcacaacagcctcaggagatcagtactatcattatcccc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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