Basic Information
VIS ID
TVIS10019215
Fusion event
HBV-MIR137HG integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
98468338/98002782 (Hg38)
End
98468338/98002782 (Hg38)
Location type
Intron2
Fragile sites / regions
FRA1M
Target gene
MIR137HG
Nearest miRNA
hsa-mir-101-1/Upstream/3459003; hsa-mir-11399/Downstream/42460;
Nearest TSS
ENST00000473358/Upstream/7782; ENST00000418344/Downstream/42523;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/81614, chr1-CpG: 67/Downstream/42628
Upstream sequence
tctcccaaagtgctcggattacagtcgtgagcccccatgcctggcccctttgctttcttaattaactcactttcactttactctcaccctgaattttctt
Downstream sequence
AAAAGGTCCATACTTCCCAAAAGTTTAAGAGCAATTGTTCTGTTTGAAAACAGCATAAGTAACTAAAGAATAAGTTCCACATATTATATTCAGTAAATAT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate