Basic Information
VIS ID
TVIS10019216
Fusion event
HBV-chr1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr1
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
121484751/121742953 (Hg38)
End
121484840/121743042 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/4648225; hsa-mir-1182/Downstream/24107545;
Nearest TSS
ENST00000473358/Upstream/162429; ENST00000443018/Downstream/21757470;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/223226, chr1-CpG: 312/Downstream/3342467
Nearby gene
EMBP1
Upstream sequence
tgcataagtctatgactgtaaaaaaaaaaaaatcctgcactggatggaatagttgtgagaaatgtatgaggattaggcactactgcattctgtggaatta
Downstream sequence
gcaatttgcaagtgtagatttcaagcgctttaaggtcaatggcagaaaaggaaatatcttcgtttcaaaactagacagaatcattcccacaaactgcgtt
Target sequence
attcccagtaacttccttgtgttgtgtgcattcaactcacagagttgaacgttcccttagacagagcagatttgaaacactctatttgt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate